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Search scaffolds using either the genome center, NCBI RefSeq or NCBI GenBank ID.
For example - Group1.1, GL630019.1 and NW_003377856.1 will all display the same scaffold.

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Landmark or Region: Examples: Group1.1, GroupUn102.
Data Source Apis mellifera (Honey Bee) Genome Assembly 4.5, scaffolds

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Tracks

Tracks

1. Official Gene Set v3.2 (current)

1. Official Gene Set v3.2 (current)

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Official Gene Set v3.2 [?]

2. Previous OGS Alignments

2. Previous OGS Alignments

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Official Gene Set v1.0 [?]

3. Gene Predictions

3. Gene Predictions

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Augustus Set 9 [?]	Fgenesh++ without RNASeq training data [?]	NCBI RefSeq [?]
Augustus Set 12 [?]	GeneID [?]	SGP2 [?]
Fgenesh without RNASeq training data [?]	N-SCAN [?]
Fgenesh++ with RNASeq training data [?]	NCBI Gnomon [?]

4. Expressed Sequence Alignments

4. Expressed Sequence Alignments

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Abdomen 454 Contigs [?]	Larvae 454 Contigs [?]	Ovary 454 Contigs [?]
Brain and Ovary 454 Contigs [?]	Mixed Antennae 454 Contigs [?]	Testes 454 Contigs [?]
Embryo 454 Contigs [?]	NCBI ESTs [?]
Forager Bee Brain Illumina Contigs [?]	Nurse Bee Brain Illumina Contigs [?]

5. Protein Homolog Alignments

5. Protein Homolog Alignments

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Acromyrmex echinator [?]	Harpegnathos saltator [?]	Nasonia vitripennis RefSeq [?]
Atta cephalotes [?]	Linepithema humile [?]	Pogonomyrmex barbatus [?]
Camponotus floridanus [?]	Nasonia vitripennis OGSv1.2 [?]	Solenopsis invicta [?]
Drosophila melanogaster [?]	Nasonia vitripennis OGSv2.0 [?]	SwissProt Metazoa [?]

6. Repeat regions

6. Repeat regions

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Transposable elements [?]	Transposable elements Simple Sequence Repeats [?]
Transposable elements BLASTX [?]	Transposable elements TBLASTX [?]

Other

Other

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DNA/GC Content

Analysis

Analysis

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Restriction Sites

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Hymenoptera Home
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The Hymenoptera Genome Database project is supported by Agriculture and Food Research Initiative Competitive grant no. 2010-65205-20407 from the USDA National Institute of Food Agriculture and BeeBase has been supported by USDA ARS, Golden Heritage Foods, Sioux Honey Association, and the Texas Agricultural Experiment Station.
When using BeeBase, please cite our paper in Nucleic Acids Research.

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