Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Cost to open a gap
Cost to extend a gap
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup
Use composition-based statistics for blastp / tblastn:
D or d: default (equivalent to 2)
0 or F or f: no composition-based statistics
1: Composition-based statistics as in NAR 29:2994-3005, 2001
2 or T or t : Composition-based score adjustment as in
Bioinformatics 21:902-911, 2005, conditioned on sequence
3: Composition-based score adjustment as in Bioinformatics
21:902-911, 2005, unconditionally
For programs other than tblastn, must either be absent or be D, F
Default = `2'
-num_descriptions <Integer, >=0>
Number of database sequences to show one-line descriptions for
Default = `500'
-num_alignments <Integer, >=0>
Number of database sequences to show alignments for
Default = `250'
Query filtering options
Filter query sequence with SEG (Format: 'yes', 'window locut hicut',
or 'no' to disable)
Default = `no'
The Hymenoptera Genome Database is hosted at the University of Missouri. It is supported by USDA National Institute of Food and Agriculture Hatch Project 1009273 and was supported by Agriculture and Food Research Initiative Competitive grant no. 2010-65205-20407.