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Data

This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window.

Data CategoryDataOrganismSourcePubMedLink

Genes

Consortium Official Gene Set Acromyrmex echinatior aech_OGSv3.8 Nygard et al. - PubMed: 21719571 HGD Ant Genomes
Apis mellifera amel_OGSv3.2 Elsik et al. - PubMed: 24479613
Honeybee Genome Sequencing Consortium - PubMed: 17073008
HGD BeeBase
Atta cephalotes acep_OGSv1.2 Suen et al. - PubMed: 21347285 HGD Ant Genomes
Bombus impatiens bimp_OGSv1.0 Sadd et al. - PubMed: 25908251 HGD BeeBase
Camponotus floridanus cflo_OGSv3.3 Bonasio et al. - PubMed: 20798317 HGD Ant Genomes
Cardiocondyla obscurior cobs_OGSv1.4 Schrader et al. - PubMed: 25510865 HGD Ant Genomes
Dufourea novaeangliae Dufourea_novaeangliae_v1.1 Kapheim KM et al. - PubMed: 25977371 HGD BeeBase
Eufriesea mexicana Eufriesea_mexicana_v1.1 Kapheim KM et al. - PubMed: 25977371 HGD BeeBase
Habropoda laboriosa Habropoda_laboriosa_v1.2 Kapheim KM et al. - PubMed: 25977371 HGD BeeBase
Harpegnathos saltator hsal_OGSv3.3 Bonasio et al. - PubMed: 20798317 HGD Ant Genomes
Lasioglossum albipes lalb_OGSv5.42 Kocher et al. - PubMed: 24359881 HGD BeeBase
Linepithema humile lhum_OGSv1.2 Smith et al. - PubMed: 21282631 HGD Ant Genomes
Megachile rotundata Megachile_rotundata_v1.1 Kapheim KM et al. - PubMed: 25977371 HGD BeeBase
Melipona quadrifasciata Melipona_quadrifasciata_v1.1_ Kapheim KM et al. - PubMed: 25977371 HGD BeeBase
Nasonia vitripennis nvit_OGSv1.2 Werren JH et al. - PubMed: 20075255 HGD NasoniaBase
Nvit_EviGene Rago A et al. - PubMed: 27561358 HGD NasoniaBase
Ooceraea biroi armyant.OGS.V1.8.6 Oxley PR et al. - PubMed: 24508170 HGD Ant Genomes
Pogonomyrmex barbatus pbar_OGSv1.2 Smith et al. - PubMed: 21282651 HGD Ant Genomes
Solenopsis invicta sinv_OGSv2.2.3 Wurm et al. - PubMed: 21282665 HGD Ant Genomes
NCBI Annotation (RefSeq and Gene) Acromyrmex echinatior GCF_000204515.1_Aech_3.9 O'Leary NA et al. - PubMed: 26553804 NCBI ftp
Apis cerana GCF_001442555.1_ACSNU-2.0 NCBI ftp
Apis dorsata GCF_000469605.1_Apis_dorsata_1.3 NCBI ftp
Apis florea GCF_000184785.2_Aflo_1.0 NCBI ftp
Apis mellifera GCF_003254395.2_Amel_HAv3.1 NCBI ftp
Athalia rosae GCF_000344095.2_Aros_2.0 NCBI ftp
Atta cephalotes GCF_000143395.1_Attacep1.0 NCBI ftp
Atta colombica GCF_001594045.1_Acol1.0 NCBI ftp
Bombus impatiens GCF_000188095.3_BIMP_2.2 NCBI ftp
Bombus terrestris GCF_000214255.1_Bter_1.0 NCBI ftp
Camponotus floridanus GCF_003227725.1_Cflo_v7.5 NCBI ftp
Cephus cinctus GCF_000341935.1_Ccin1 NCBI ftp
Ceratina calcarata GCF_001652005.1_ASM165200v1 NCBI ftp
Ceratosolen solmsi GCF_000503995.1_CerSol_1.0 NCBI ftp
Copidosoma floridanum GCF_000648655.2_Cflo_2.0 NCBI ftp
Cyphomyrmex costatus GCF_001594065.1_Ccosl1.0 NCBI ftp
Diachasma alloeum GCF_001412515.1_Dall1.0 NCBI ftp
Dinoponera quadriceps GCF_001313825.1_ASM131382v1 NCBI ftp
Drosophila melanogaster GCF_000001215.4_Release_6_plus_ISO1_MT NCBI ftp
Dufourea novaeangliae GCF_001272555.1_ASM127255v1 NCBI ftp
Eufriesea mexicana GCF_001483705.1_ASM148370v1 NCBI ftp
Fopius arisanus GCF_000806365.1_ASM80636v1 NCBI ftp
Habropoda laboriosa GCF_001263275.1_ASM126327v1 NCBI ftp
Harpegnathos saltator GCF_003227715.1_Hsal_v8.5 NCBI ftp
Linepithema humile GCF_000217595.1_Lhum_UMD_V04 NCBI ftp
Megachile_rotundata GCF_000220905.1_MROT_1.0 NCBI ftp
Microplitis demolitor GCF_000572035.2_Mdem2 NCBI ftp
Monomorium pharaonis GCF_003260585.2_ASM326058v2 NCBI ftp
Nasonia vitripennis GCF_000002325.3_Nvit_2.1 NCBI ftp
Neodiprion lecontei GCF_001263575.1_Nlec1.0 NCBI ftp
Ooceraea biroi GCF_003672135.1_Obir_v5.4 NCBI ftp
Orussus abietinus GCF_000612105.2_Oabi_2.0 NCBI ftp
Pogonomyrmex barbatus GCF_000187915.1_Pbar_UMD_V03 NCBI ftp
Polistes canadensis GCF_001313835.1_ASM131383v1 NCBI ftp
Polistes dominula GCF_001465965.1_Pdom_r1.2 NCBI ftp
Pseudomyrmex gracilis GCF_002006095.1_ASM200609v1 NCBI ftp
Solenopsis invicta GCF_000188075.2_Si_gnH NCBI ftp
Temnothorax curvispinosus GCF_003070985.1_ASM307098v1 NCBI ftp
Trachymyrmex cornetzi GCF_001594075.1_Tcor1.0 NCBI ftp
Trachymyrmex septentrionalis GCF_001594115.1_Tsep1.0 NCBI ftp
Trachymyrmex zeteki GCF_001594055.1_Tzet1.0 NCBI ftp
Trichogramma pretiosum GCF_000599845.2_Tpre_2.0 NCBI ftp
Vollenhovia emeryi GCF_000949405.1_V.emery_V1.0 NCBI ftp
Wasmannia auropunctata GCF_000956235.1_wasmannia.A_1.0 NCBI ftp

Homology

Orthologue relationships from OrthoDB Acromyrmex echinatior
Apis mellifera
Athalia rosae
Atta colombica
Bombus impatiens
Camponotus floridanus
Cephus cinctus
Ceratina calcarata
Copidosoma floridanum
Cyphomyrmex costatus
Diachasma alloeum
Dinoponera quadriceps
Drosophila melanogaster
Dufourea novaeangliae
Eufriesea mexicana
Fopius arisanus
Habropoda laboriosa
Harpegnathos saltator
Linepithema humile
Megachile_rotundata
Microplitis demolitor
Monomorium pharaonis
Nasonia vitripennis
Neodiprion lecontei
Ooceraea biroi
Orussus abietinus
Pogonomyrmex barbatus
Polistes canadensis
Pseudomyrmex gracilis
Solenopsis invicta
Trachymyrmex septentrionalis
Trichogramma pretiosum
Vollenhovia emeryi
Wasmannia auropunctata
OrthoDB Version 10 Kriventseva EV et al. - PubMed: 30395283 OrthoDB Downloads

Proteins

Protein Annotations from UniProt Acromyrmex echinatior
Apis cerana
Apis dorsata
Apis florea
Apis mellifera
Athalia rosae
Atta cephalotes
Atta colombica
Bombus impatiens
Bombus terrestris
Camponotus floridanus
Cardiocondyla obscurior
Cephus cinctus
Ceratina calcarata
Ceratosolen solmsi
Copidosoma floridanum
Cyphomyrmex costatus
Diachasma alloeum
Dinoponera quadriceps
Drosophila melanogaster
Dufourea novaeangliae
Eufriesea mexicana
Fopius arisanus
Habropoda laboriosa
Harpegnathos saltator
Lasioglossum albipes
Linepithema humile
Megachile_rotundata
Melipona quadrifasciata
Microplitis demolitor
Monomorium pharaonis
Nasonia vitripennis
Neodiprion lecontei
Ooceraea biroi
Orussus abietinus
Pogonomyrmex barbatus
Polistes canadensis
Polistes dominula
Pseudomyrmex gracilis
Solenopsis invicta
Temnothorax curvispinosus
Trachymyrmex cornetzi
Trachymyrmex septentrionalis
Trachymyrmex zeteki
Trichogramma pretiosum
Vollenhovia emeryi
Wasmannia auropunctata
UniProt - Release 2019_04 The UniProt Consortium - PubMed: 30395287 UniProt downloads
Protein family and domain assignments to proteins from InterPro Acromyrmex echinatior
Apis cerana
Apis dorsata
Apis florea
Apis mellifera
Athalia rosae
Atta cephalotes
Atta colombica
Bombus impatiens
Bombus terrestris
Camponotus floridanus
Cardiocondyla obscurior
Cephus cinctus
Ceratina calcarata
Ceratosolen solmsi
Copidosoma floridanum
Cyphomyrmex costatus
Diachasma alloeum
Dinoponera quadriceps
Drosophila melanogaster
Dufourea novaeangliae
Eufriesea mexicana
Fopius arisanus
Habropoda laboriosa
Harpegnathos saltator
Lasioglossum albipes
Linepithema humile
Megachile_rotundata
Melipona quadrifasciata
Microplitis demolitor
Monomorium pharaonis
Nasonia vitripennis
Neodiprion lecontei
Ooceraea biroi
Orussus abietinus
Pogonomyrmex barbatus
Polistes canadensis
Polistes dominula
Pseudomyrmex gracilis
Solenopsis invicta
Temnothorax curvispinosus
Trachymyrmex cornetzi
Trachymyrmex septentrionalis
Trachymyrmex zeteki
Trichogramma pretiosum
Vollenhovia emeryi
Wasmannia auropunctata
InterPro version 73 Mitchel AL et al. PubMed: 30398656 InterPro FTP

Gene Ontology Annotation

Protein Annotations from UniProt Acromyrmex echinatior
Apis cerana
Apis dorsata
Apis florea
Apis mellifera
Athalia rosae
Atta cephalotes
Atta colombica
Bombus impatiens
Bombus terrestris
Camponotus floridanus
Cardiocondyla obscurior
Cephus cinctus
Ceratina calcarata
Ceratosolen solmsi
Copidosoma floridanum
Cyphomyrmex costatus
Diachasma alloeum
Dinoponera quadriceps
Drosophila melanogaster
Dufourea novaeangliae
Eufriesea mexicana
Fopius arisanus
Habropoda laboriosa
Harpegnathos saltator
Lasioglossum albipes
Linepithema humile
Megachile_rotundata
Melipona quadrifasciata
Microplitis demolitor
Monomorium pharaonis
Nasonia vitripennis
Neodiprion lecontei
Ooceraea biroi
Orussus abietinus
Pogonomyrmex barbatus
Polistes canadensis
Polistes dominula
Pseudomyrmex gracilis
Solenopsis invicta
Temnothorax curvispinosus
Trachymyrmex cornetzi
Trachymyrmex septentrionalis
Trachymyrmex zeteki
Trichogramma pretiosum
Vollenhovia emeryi
Wasmannia auropunctata
UniProt - Release 2019_04 The UniProt Consortium PubMed: 30395287 UniProt downloads

Genome Assembly

Genome Assembly Acromyrmex echinatior GCF_000204515.1_Aech_3.9 NCBI ftp
Apis cerana GCF_001442555.1_ACSNU-2.0 NCBI ftp
Apis dorsata GCF_000469605.1_Apis_dorsata_1.3 NCBI ftp
Apis florea GCF_000184785.2_Aflo_1.0 NCBI ftp
Apis mellifera GCF_003254395.2_Amel_HAv3.1 NCBI ftp
Athalia rosae GCF_000344095.2_Aros_2.0 NCBI ftp
Atta cephalotes GCF_000143395.1_Attacep1.0 NCBI ftp
Atta colombica GCF_001594045.1_Acol1.0 NCBI ftp
Bombus impatiens GCF_000188095.3_BIMP_2.2 NCBI ftp
Bombus terrestris GCF_000214255.1_Bter_1.0 NCBI ftp
Camponotus floridanus GCF_003227725.1_Cflo_v7.5 NCBI ftp
Cardiocondyla obscurior Cobs_1.4 HGD Ant Genomes
Cephus cinctus GCF_000341935.1_Ccin1 NCBI ftp
Ceratina calcarata GCF_001652005.1_ASM165200v1 NCBI ftp
Ceratosolen solmsi GCF_000503995.1_CerSol_1.0 NCBI ftp
Copidosoma floridanum GCF_000648655.2_Cflo_2.0 NCBI ftp
Cyphomyrmex costatus GCF_001594065.1_Ccosl1.0 NCBI ftp
Diachasma alloeum GCF_001412515.1_Dall1.0 NCBI ftp
Dinoponera quadriceps GCF_001313825.1_ASM131382v1 NCBI ftp
Drosophila melanogaster GCF_000001215.4_Release_6_plus_ISO1_MT NCBI ftp
Dufourea novaeangliae GCF_001272555.1_ASM127255v1 NCBI ftp
Eufriesea mexicana GCF_001483705.1_ASM148370v1 NCBI ftp
Fopius arisanus GCF_000806365.1_ASM80636v1 NCBI ftp
Habropoda laboriosa GCF_001263275.1_ASM126327v1 NCBI ftp
Harpegnathos saltator GCF_003227715.1_Hsal_v8.5 NCBI ftp
Lasioglossum albipes Lalb_v2 HGD BeeBase
Linepithema humile GCF_000217595.1_Lhum_UMD_V04 NCBI ftp
Megachile_rotundata GCF_000220905.1_MROT_1.0 NCBI ftp
Melipona quadrifasciata GCA_001276565.1_ASM127656v1 HGD Ant Genomes
Microplitis demolitor GCF_000572035.2_Mdem2 NCBI ftp
Monomorium pharaonis GCF_003260585.2_ASM326058v2 NCBI ftp
Nasonia vitripennis GCF_000002325.3_Nvit_2.1 NCBI ftp
Neodiprion lecontei GCF_001263575.1_Nlec1.0 NCBI ftp
Ooceraea biroi GCF_003672135.1_Obir_v5.4 NCBI ftp
Orussus abietinus GCF_000612105.2_Oabi_2.0 NCBI ftp
Pogonomyrmex barbatus GCF_000187915.1_Pbar_UMD_V03 NCBI ftp
Polistes canadensis GCF_001313835.1_ASM131383v1 NCBI ftp
Polistes dominula GCF_001465965.1_Pdom_r1.2 NCBI ftp
Pseudomyrmex gracilis GCF_002006095.1_ASM200609v1 NCBI ftp
Solenopsis invicta GCF_000188075.2_Si_gnH NCBI ftp
Temnothorax curvispinosus GCF_003070985.1_ASM307098v1 NCBI ftp
Trachymyrmex cornetzi GCF_001594075.1_Tcor1.0 NCBI ftp
Trachymyrmex septentrionalis GCF_001594115.1_Tsep1.0 NCBI ftp
Trachymyrmex zeteki GCF_001594055.1_Tzet1.0 NCBI ftp
Trichogramma pretiosum GCF_000599845.2_Tpre_2.0 NCBI ftp
Vollenhovia emeryi GCF_000949405.1_V.emery_V1.0 NCBI ftp
Wasmannia auropunctata GCF_000956235.1_wasmannia.A_1.0 NCBI ftp

Publications

Gene versus publications Acromyrmex echinatior
Apis cerana
Apis dorsata
Apis florea
Apis mellifera
Athalia rosae
Atta cephalotes
Bombus impatiens
Bombus terrestris
Camponotus floridanus
Cephus cinctus
Copidosoma floridanum
Dinoponera quadriceps
Drosophila melanogaster
Harpegnathos saltator
Linepithema humile
Megachile_rotundata
Microplitis demolitor
Monomorium pharaonis
Nasonia vitripennis
Ooceraea biroi
Orussus abietinus
Pogonomyrmex barbatus
Polistes dominula
Solenopsis invicta
Vollenhovia emeryi
NCBI PubMed NCBI Resource Coordinators - PubMed: 29140470 NCBI PubMed

Pathways

Pathway information inferred through orthologues from curated human pathways Drosophila melanogaster Reactome Version 68, March 2019 Fabregat et al. - PubMed: 29145629 Reactome Download
Pathway Information Acromyrmex echinatior
Apis mellifera
Atta cephalotes
Bombus impatiens
Bombus terrestris
Camponotus floridanus
Dinoponera quadriceps
Drosophila melanogaster
Harpegnathos saltator
Linepithema humile
Microplitis demolitor
Monomorium pharaonis
Nasonia vitripennis
Ooceraea biroi
Pogonomyrmex barbatus
Polistes canadensis
Pseudomyrmex gracilis
Solenopsis invicta
KEGG Kanehisa et al. - PubMed: 27899662 KEGG

Interactions

Interactions Apis mellifera
Drosophila melanogaster
BioGRID - Version 3.5.171 Oughtred R. et al. - PubMed: 30476227 BioGRID Download
Drosophila melanogaster IntAct - March 2019 Orchard S. et al. - PubMed: 24234451 IntAct FTP

Ontologies

Evidence Code Ontology (ECO) Evidence Ontology - May 5, 2017 Chibucos et al. - PubMed: 25052702 ECO
Gene Ontology (GO) Gene Ontology - Jan 19, 2018 Gene Ontology Consortium - PubMed: 30395331 GO
Hymenoptera Anatomy Ontology (HAO) Hymenoptera Anatomy Ontology - Apr 26, 2018 Yoder M.J. et al. - PubMed: 21209921 HAO FTP